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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00057002-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 387aa MW: 42692.2 Da PI: 4.6882 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 16 | 38 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia+ ++ gRt++++k++w++ PSME_00057002-RA 16 RWSLIAAQLP-GRTDNELKNYWNS 38 5*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.138 | 1 | 44 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.55E-6 | 14 | 45 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.87E-6 | 14 | 37 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-11 | 15 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 15 | 38 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDDCVNDKQS NAVFGRWSLI AAQLPGRTDN ELKNYWNSRI KKKLELKQNL SCSSSNSNAE 60 TKAQIPSRSK TNSVSIHAHH VFTSSRSSQQ CMDVLPEGSE PPNNAFNVVT SGENLLCVPG 120 VMDLNHIQIQ DQSDHEFLID PDSTNNQQIC YPNLWTNATS LQIHESFSCP AAFISPSVHA 180 NSSTCDQLTI ESCRTAVAPC FADFSIGSTG INVPALVESD SSKEKLEIDE NHITIGYSNA 240 TDSFQVVHPR KYTSSEAEIS ILGKCLNLYE DTTHQSYPAL DPQIQFSWPA DMFSAIHSEE 300 DSGGHLNLSS DVNLGVPTYI DNSTRFKTFL LPHIDEAIKA NPIPTLLGPG KRNGQLETEC 360 RGEAGQFTAW AHHDMYNIND VDQIDLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 9e-12 | myb domain protein 68 |